Title page for ETD etd-04152010-102429


Type of Document Dissertation
Author Thompkins, Kandi Sheral
Author's Email Address kthomp1@tigers.lsu.edu, kst250@yahoo.com
URN etd-04152010-102429
Title The Conserved DedA Family of E. Coli Membrane Proteins: Genetic and Topological Analysis
Degree Doctor of Philosophy (Ph.D.)
Department Biological Sciences
Advisory Committee
Advisor Name Title
Doerrler, William Committee Chair
Waldrop, Grover Committee Member
Newcomer, Marcia Committee Member
Stephens, Jacqueline Committee Member
Feng, Ji-Ming Dean's Representative
Keywords
  • yqjA
  • DedA protein family
  • Lud135
  • yghB
  • lipid analysis
  • BC201
  • BC202
Date of Defense 2010-03-30
Availability unrestricted
Abstract
Ludox density gradients were used to enrich for Escherichia coli mutants with conditional growth defects and alterations in membrane composition. A temperature-sensitive mutant named Lud135 was isolated with mutations in two related, nonessential genes: yghB and yqjA. yghB harbors a single missense mutation (G203D) and yqjA contains a nonsense mutation (W92TGA) in Lud135. Both mutations are required for the temperature-sensitive phenotype: targeted deletion of both genes in a wild-type background results in a strain with a similar phenotype and expression of either gene from a plasmid restores growth at elevated temperatures. The mutant has altered membrane phospholipid levels, with elevated levels of acidic phospholipids, when grown under permissive conditions. Growth of Lud135 under nonpermissive conditions is restored by the presence of millimolar concentrations of divalent cations Ca2+, Ba2+, Sr2+, or Mg2+ or 300 to 500 mM NaCl but not 400 mM sucrose. Microscopic analysis of Lud135 demonstrates a dramatic defect at a late stage of cell division when cells are grown under permissive conditions. Lud135 is non-motile and overproduces outer membrane vesicles that contain FliC. Preliminary results from the topological analysis of YqjA suggest it contains 4 transmembrane domains with a large cytoplasmic domain that is enriched in positive amino acids. yghB and yqjA belong to the conserved and widely distributed dedA gene family, for which no function has been reported. The two open reading frames encode predicted polytopic inner membrane proteins with 61% amino acid identity. It is likely that YghB and YqjA play redundant but critical roles in membrane biology that are essential for completion of cell division in E. coli.

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